In Depth Variant Analysis:  c.1856T>C (p.Leu619Pro)

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  c.1856T>C
p.Leu619Pro (Legacy AA No. 601)

Variant Type:  
Point
Domain:  
Serine Protease
Codon Change: 
T>C
Variant Effect: 
Missense
No. of Patients Reported: 
1
Phenotype: 
I
Allele Count *: 
1
Allele Number *: 
251354
Allele Frequency *: 
0.000004

Variant Comments & Reference:

Leu619 belongs to the C-terminal alpha-helix of the protease domain participating to the intimate linkage of this domain to the circular platform formed by the apple domains, a notable feature of the FXI structure that has been demonstrated to have implications for FXI ligand binding. Expression studies revealed a secretion defect. Spena et al 2009

Patient Information: Show



Residue Information:




  Name Type Cyclic Size Position Hydrophobicity Charge
Wild Type
Leu
aliphatic
acyclic
large
buried
hydrophobic
neutral
Mutated
Pro
-
cyclic
medium
surface
hydrophobic
neutral


Substitution Analysis:



  • Grantham Score : 98
  • PolyPhen-2 Prediction : Probably Damaging (SCORE: 1.000)
  • SIFT Prediction : Probably Damaging (SCORE: 0.01)
  • PROVEAN Prediction : Deleterious (SCORE: -3.766)

  • Structural Implications:


    Leu619 is a buried residue  (surface accessibility value = 1 ).

    Leu619 is in a region of secondary structure within the FXI domains.

    The DSSP assignment for this residue is ... H.

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    Factor XI Variant Database