In Depth Variant Analysis:  c.359T>C (p.Met120Thr)

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  c.359T>C
p.Met120Thr (Legacy AA No. 102)

Variant Type:  
Point
Domain:  
Apple 2
Codon Change: 
T>C
Variant Effect: 
Missense
No. of Patients Reported: 
2
Phenotype: 
I
Allele Count *: 
2
Allele Number *: 
251262
Allele Frequency *: 
0.000008

Variant Comments & Reference:

Met120 is a buried residue and is conserved across six species and prekallikrein. Replacement of the hydrophobic non-polar Met with a hydrophilic polar Thr is likely to be structurally disruptive. Expression studies indicate it is not expressed and type I. This amino acid substitution does not prevent the formation of dimers, despite the established role of the Ap2 domain in dimer formation. Mitchell et al 2006, Mitchell et al 2007

Patient Information: Show



Residue Information:




  Name Type Cyclic Size Position Hydrophobicity Charge
Wild Type
Met
-
acyclic
large
buried
hydrophobic
neutral
Mutated
Thr
-
acyclic
medium
surface
hydrophilic
neutral


Substitution Analysis:



  • Grantham Score : 81
  • PolyPhen-2 Prediction : Possibly Damaging (SCORE: 0.866)
  • SIFT Prediction : Probably Damaging (SCORE: 0.00)
  • PROVEAN Prediction : Deleterious (SCORE: -2.789)

  • Structural Implications:


    Met120 is a buried residue  (surface accessibility value = 0 ).

    Met120 is in a region of secondary structure within the FXI domains.

    The DSSP assignment for this residue is ... E.

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    Factor XI Variant Database